Time |
Speaker |
Title |
3/23, 10:00 a.m. |
Frank Rosenzweig
Univ. Montana |
E Unibus Plurum: How Biodiversity Evolves in a Simple, Homogenous Environment[Podcast][Aud][Cam] |
3/22, 11:00 a.m. |
Ganna Rozhnova
Univ. de Lisboa & KITP |
Stochastic Models of Infection Dynamics[Slides][Podcast][Aud][Cam] |
3/22, 9:30 a.m. |
Dirk Brockmann
Northwestern Univ. |
Modelling Disease Dynamics on a Global Scale[Slides][Podcast][Vid][Aud][Cam] |
3/21, 11:30 a.m. |
Seth Blumberg
NIH Fogarty / UCLA EEB & KITP |
Disentangling the Transmission Dynamics of Human Monkeypox and Other Emerging Zoonoses[Slides][Podcast][Aud][Cam] |
3/21, 10:00 a.m. |
Dustin Brisson
UPenn & KITP |
Niche Diversification and Gene-for-Gene Interactions in a Vertebrate-pathogen System |
3/17, 5:00 p.m. |
Bob Austin
Princeton |
Falling Uphill: Acceleration of the Emergence of Bacterial Antibiotic Resistance[Slides][Podcast][Aud][Cam] |
3/17, 11:00 a.m. |
Joao Xavier
Sloan-Kettering Inst. |
Conflict and Cooperation in Microbes[Slides][Podcast][Vid][Aud][Cam] |
3/17, 9:30 a.m. |
Paul Rainey
NZIAS |
Evolution of Bet Hedging[Podcast][Aud][Cam] |
3/16, 11:00 a.m. |
Pleuni Pennings
Harvard & KITP |
What Determines the Rate of Evolution of Resistance in HIV?[Slides][Podcast][Aud][Cam] |
3/16, 9:30 a.m. |
Ville Mustonen
Wellcome Trust Sanger Institute & KITP |
Quantifying Selective Forces from Allele Frequency Time-series Data of a Yeast Population Under Heat Stress[Podcast][Aud][Cam] |
3/15, 11:00 a.m. |
Ilya Nemenman
Emory Univ. & KITP |
Evolutionary Dynamics in Heterogeneous Environments: Three Baby Steps[Slides][Podcast][Aud][Cam] |
3/15, 9:30 a.m. |
Michael Doebeli
UBC |
Adaptive Diversification[Slides][Podcast][Aud][Cam] |
3/14, 11:00 a.m. |
David Nelson
Harvard |
Competition and Cooperation at Frontiers[Slides][Podcast][Aud][Cam] |
3/14, 9:30 a.m. |
Oskar Hallatschek
MPI & KITP |
Clonal Interference in Structured Populations: Long Range Jumps Better than Sex[Podcast][Aud][Cam] |
3/10, 5:00 p.m. |
Sergio Lukic
Rutgers/SUNY & KITP |
Numerical Solutions to Complex Demographic Models[Slides][Podcast][Aud][Cam] |
3/10, 11:00 a.m. |
Trevor Lawley
Sanger Inst. |
Application of High-throughput Genomics to Clostridium Difficile Evolution and Transmission[Podcast][Aud][Cam] |
3/10, 9:30 a.m. |
Leonid Mirny
MIT |
Accumulation of Deleterious Passenger Mutations in Cancer[Slides][Podcast][Aud][Cam] |
3/09, 11:00 a.m. |
Joachim Krug
Univ. Cologne |
Sign Epistasis and Evolutionary Accessibility[Slides][Podcast][Aud][Cam] |
3/09, 9:30 a.m. |
Shamil Sunyaev
Harvard Med. |
Selection and Migration Inside the Host: Rapid Evolution of Human JC Virus Associated with Development of PML[Podcast][Aud][Cam] |
3/08, 11:00 a.m. |
Rita Maria Zorzenon dos Santos
UFPE-Brazil & KITP |
Intra- and Inter-host Spread and Evolution of Tuberculosis[Aud][Cam] |
3/08, 9:30 a.m. |
Claus Wilke
Univ. Texas, Austin & KITP |
Biophysical Constraints on Sequence Evolution[Podcast][Aud][Cam] |
3/07, 2:00 p.m. |
Bernhard Mehlig
Univ. Gothenburg |
Linkage Disequilibrium in Populations of Variable Size[Slides][Podcast][Aud][Cam] |
3/07, 10:00 a.m. |
Juliette de Meaux
Muenster, Germany: Westfaelische Wilhelms-Universität & KITP |
Evolution of Flagellin Perception in Arabidopsis Thaliana and Its Relatives[Podcast][Aud][Cam] |
3/02, 5:00 p.m. |
Santiago Elena
(Valencia, Spain & KITP)
Mario Fares
(Trinity College) |
Discussion: What Does Experimental Evolution Teach About the Evolution of Emergent Viruses?[Podcast][Aud][Cam] |
3/02, 4:00 p.m. |
Leor Weinberger
UCSD |
Viral Gene Circuitry and Stochastic Noise in Viral Gene Expression (tentative) |
3/02, 11:00 a.m. |
Richard Neher
MPI & KITP |
HIV-1 Intra-host Dynamics[Slides][Podcast][Aud][Cam] |
3/02, 9:30 a.m. |
Catherine Macken
LANL |
Migration Strategies for Pandemic Influenza in the USA[Slides][Podcast][Aud][Cam] |
3/01, 5:00 p.m. |
Thomas Leitner
LANL |
Inferring HIV Epidemics from HIV Phylogenetics[Podcast][Aud][Cam] |
3/01, 4:00 p.m. |
Colin Parrish
Cornell |
Canine Parvovirus Origin and Evolution[Podcast][Aud][Cam] |
3/01, 11:00 a.m. |
Joshua Weitz
Georgia Tech. |
Bacterial Fate Determination by Co-infecting Viruses[Slides][Podcast][Aud][Cam] |
3/01, 9:30 a.m. |
Mario Fares
Trinity College |
Dynamics of a Re-emerging Virus: Foot-and-Mouth Disease Virus[Podcast][Aud][Cam] |
2/28, 4:00 p.m. |
Michael Lässig
Univ.of Cologne & KITP |
Clonal Interference in the Evolution of Influenza[Podcast][Aud][Cam] |
02/28, 12:15 p.m. |
Santiago Elena
IBMCP & KITP |
The Evolutionary Genetics of Emerging Viruses[Podcast][Aud][Cam]
KITP Blackboard Lunch |
2/28, 11:00 a.m. |
Julia Gog
Univ. of Cambridge & KITP |
Simple Models for Influenza Antigenic Drift[Slides][Podcast][Aud][Cam] |
2/25, 1:30 p.m. |
Ariel Weinberger
UCB & KITP |
How Persisting Viruses Overcome Adaptive Immunity |
2/25, 11:00 a.m. |
Igor Rouzine
Tufts Univ. & KITP |
Within-Host Dynamics HIV-1[Slides][Podcast][Aud][Cam] |
2/25, 9:30 a.m. |
Philip Gerrish
Univ. New Mexico |
Mutation Rate and the Maintenance of Cooperation[Podcast][Aud][Cam] |
2/24, 4:45 p.m. |
Mark Gerstein
Yale |
Biological Network Change and Evolution[Slides][Podcast][Aud][Cam] |
2/24, 3:45 p.m. |
Sergei Maslov
BNL & KITP |
Home Depot Model of Prokaryotic Evolution by Horizontal Gene Transfer[Slides][Podcast][Aud][Cam] |
2/24, 10:00 a.m. |
Alan Perelson
LANL & KITP |
How to Model a Viral Infection: Hepatitis C Virus[Slides][Podcast][Aud][Cam] |
2/23, 5:00 p.m. |
Claus Wilke
Univ. Texas, Austin & KITP |
Quasispecies vs Standard Population Genetics Models[Podcast][Aud][Cam] |
2/23, 11:00 a.m. |
Marco Morelli
Glasgow Univ. & KITP |
The Use of Ultradeep Sequencing for Characterizing Viral Populations[Podcast][Aud][Cam] |
2/23, 9:30 a.m. |
Lindi Wahl
Univ. Western Ontario |
Three Surprising Predictions From Modeling Evolution Experiments[Slides][Podcast][Aud][Cam] |
2/22, 10:00 a.m. |
Paul Turner
Yale |
Evolution of Robustness[Slides][Podcast][Aud][Cam] |
2/18, 11:00 a.m. |
Susi Remold
Univ. Louisville & KITP |
Experimental Evolution of Host-Switching and Emergence of New Viruses[Slides][Podcast][Aud][Cam] |
2/18, 9:30 a.m. |
Forest Rohwer
SDSU |
Virus Metagenomics[Slides][Podcast][Aud][Cam] |
2/17, 11:00 a.m. |
Eugene Koonin
NIH & KITP |
The Virus World, Its Evolution, Evolution of Antiviral Defense, and the Role of Viruses in the Evolution of Cells[Slides][Podcast][Aud][Cam] |
2/17, 9:30 a.m. |
James Bull
Univ. Texas, Austin |
Quasispecies and Lethal Mutagenesis: Concepts and Practice[Podcast][Aud][Cam] |
2/16, 3:45 p.m. |
Jonathan Miller
Okinawa Inst. & KITP |
Genome Sequence Power-Laws <=> Recombination[Podcast][Aud][Cam] |
2/16, 10:00 a.m. |
Santiago Elena
IBMCP & KITP |
Experimental Evolution of Viruses: Model Systems and Questions[Slides][Podcast][Aud][Cam] |
2/15, 3:45 p.m. |
Nigel Goldenfeld
UIUC |
Two Problems in Microbial Genome Evolution: Diversification Fronts and the Evolution of Compositional Bias[Slides][Podcast][Aud][Cam] |
2/15, 11:00 a.m. |
Richard Neher
MPI & KITP |
Sex, Draft, and Survival[Slides][Podcast][Aud][Cam] |
2/15, 10:00 a.m. |
Sally Otto
UBC |
Recombination and the Deleterious Hitchhiker[Slides][Podcast][Aud][Cam] |
2/14, 10:45 a.m. |
Daniel Weissman
Institute of Science and Technology & KITP |
The Rate of Adaptation in Large Sexual Populations[Slides][Podcast][Aud][Cam] |
2/14, 9:30 a.m. |
Nick Barton
IST Austria |
Branching Processes in Population Genetics[Podcast][Aud][Cam] |
2/10, 5:00 p.m. |
Jose Fontanari
Univ. of Sao Paulo & KITP |
On Cultural Evolution[Slides][Podcast][Aud][Cam] |
2/10, 4:00 p.m. |
Ha Youn Lee
Univ. Rochester & KITP |
Modeling and Quantification of HIV-1 and SIV Intrahost Sequence Evolution[Slides][Podcast][Aud][Cam] |
2/10, 10:00 a.m. |
Edo Kussell
NYU |
Dynamics of Bacterial Sequence Evolution |
2/09, 11:15 a.m. |
Armita Nour Mohammad
Univ. Köln & KITP |
Evolutionary Modes of Regulatory Sequences in Eukaryotes[Slides][Podcast][Aud][Cam] |
2/09, 9:30 a.m. |
Christian Schlötterer
Univ. Wien |
New-generation Sequencing and the Detection of Selection in Drosophila and Its Endosymbionts |
2/08, 11:00 a.m. |
Aleksandra Walczak
LPT/ENS & KITP |
The Effects of Negative Selection on the Evolution of Linked Sites[Slides][Podcast][Aud][Cam] |
2/08, 9:30 a.m. |
Stephan Schiffels
Univ. Cologne & KITP |
Emergent Neutrality in Adaptive Genome Evolution[Slides][Podcast][Aud][Cam] |
2/07, 3:45 p.m. |
Gavin Sherlock
Stanford Medical |
Watching Yeast Change: Using Genomics to Understand the Influence of Epistasis on the Adaptive Landscape[Slides][Podcast][Aud][Cam] |
2/07, 10:00 a.m. |
Eugene Koonin
NIH & KITP |
Tree of Life, Net of Life, Forest of Life - Where Are We?[Slides][Podcast][Aud][Cam] |
2/03, 11:00 a.m. |
Olivier Tenaillon
Inserm U722 |
The Bases of Convergence in Experimental Adaptation[Slides][Podcast][Aud][Cam] |
2/03, 9:30 a.m. |
Ana Margarida Sousa
Instituto Gulbenkian de Ciência & KITP |
Epistasis and Compensatory Evolution of Antibiotic Resistance[Slides][Podcast][Aud][Cam] |
2/02, 10:00 a.m. |
Isabel Gordo
Instituto Gulbenkian de Ciência & KITP |
The Fitness Effects of Mutation in Escherichia Coli: The Good and the Bad[Podcast][Aud][Cam] |
2/01, 10:00 a.m. |
Berenike Maier
WWU Münster & KITP |
The Type IV Pilus as a Multifunctional Bacterial Motor[Slides][Podcast][Aud][Cam] |
1/31, 10:00 a.m. |
Ivan Matic
Univ. Paris |
Environmental Tuning of Mutation Rates[Podcast][Aud][Cam] |
1/28, 10:00 a.m. |
Terry Hwa
UCSD |
On Growth, Antibiotic Resistance, and Evolution[Slides][Podcast][Aud][Cam] |
1/27, 11:00 a.m. |
Alan Perelson
LANL & KITP |
HIV: Data and Models[Slides][Podcast][Aud][Cam] |
1/27, 9:30 a.m. |
Martin Weigt
Human Genetics Foundation & KITP |
Interprotein Residue Contacts and Interaction Specificity in Bacterial Signal Transduction[Slides][Podcast][Aud][Cam] |
1/26, 10:00 a.m. |
Joy Bergelson
Univ. Chicago & KITP |
The Evolution of Gene-for-gene Interactions in a Plant-pathogen System[Podcast][Aud][Cam] |
1/25, 10:00 a.m. |
Erik van Nimwegen
Univ. of Basel & KITP |
Looking for Macroscopic Laws in the Evolution of Genotypes and Phenotypes[Podcast][Aud][Cam] |
1/24, 10:00 a.m. |
Lilia Perfeito
Univ. Cologne & KITP |
Fitness Landscape of a Metabolic Pathway[Slides][Podcast][Aud][Cam] |
1/21, 11:00 a.m. |
Lei-Han Tang
Hong Kong Baptist |
Regulation of Carbon Flow in Microbial Metabolism[Slides][Podcast][Aud][Cam] |
1/21, 10:00 a.m. |
Arjan de Visser
Wageningen Univ. & KITP |
Microbial Evolution on Empirical Fitness Landscapes[Slides][Podcast][Aud][Cam] |
1/20, 3:45 p.m. |
Michael Lässig
Univ.of Cologne & KITP |
Can Evolution Sense the Curvature of Fitness Landscapes?[Podcast][Aud][Cam] |
1/20, 3:45 p.m. |
Daniel Weinreich
Brown Univ. & KITP |
Tracking Evolutionary Trajectories of Sexual Populations[Slides][Podcast][Aud][Cam] |
1/20, 10:00 a.m. |
Kim Sneppen
Niels Bohr Inst. & KITP |
Lessons From Phage Biology[Podcast][Aud][Cam] |
1/19, 3:45 p.m. |
Namiko Mitarai
Niels Bohr Inst. & KITP |
Choice of Synonymous Codons and Ribosome Traffic[Podcast][Aud][Cam] |
1/19, 10:00 a.m. |
Michael Desai
Harvard & KITP |
Genetic Variation and the Fate of Beneficial Mutations in Asexual Populations[Slides][Podcast][Aud][Cam] |
1/18, 2:00 p.m. |
Sheri Simmons
Marine Biological Laboratory & KITP |
Diversity in Microbial Populations in the Wild[Slides][Podcast][Aud][Cam] |
1/18, 10:00 a.m. |
Bonnie Bassler
Princeton |
Information Processing in Quorum Sensing Circuits[Slides][Podcast][Aud][Cam] |
1/14, 10:00 a.m. |
Eugene Shakhnovich
Harvard & KITP |
Evolution on Physics-based Fitness Landscapes: Theory and Experiment[Podcast][Aud][Cam] |
1/13, 10:00 a.m. |
Daniel Weinreich
Brown Univ. & KITP |
The Simplest Questions of Adaptation I Know (and perhaps even some answers!)[Slides][Podcast][Aud][Cam] |
1/12, 10:00 a.m. |
Thane Papke
UCONN & KITP |
Haloarchaea: Recombination, Outcomes and Mechanisms[Podcast][Aud][Cam] |
1/11, 10:00 a.m. |
Sergey Kryazhimskiy
Harvard & KITP |
How Does Demography Affect Adaptation?[Slides][Podcast][Aud][Cam] |
1/10, 10:00 a.m. |
Jeff Gore
MIT & KITP |
Cooperation and Cheating in Microbes[Podcast][Aud][Cam] |
1/07, 2:15 p.m. |
Matt Kane
NSF & KITP |
Funding Opportunities for Research in Biological Physics[Podcast][Aud][Cam] |
1/07, 2:00 p.m. |
Marty Einhorn
KITP |
What's a Wiki Good For?[Podcast][Aud][Cam] |
1/07, 10:00 a.m. |
Paul Sniegowski
Univ. of Penn & KITP |
Mutation Rates, Hitchhiking and Extinction in Asexuals |
1/06, 10:00 a.m. |
Rachel Whitaker
UIUC |
Evolutionary Dynamics in Wild Microbial Populations[Slides][Podcast][Aud][Cam] |
1/05, 10:20 a.m. |
Christopher Marx
Harvard |
The Art/science of Experimental Evolution[Slides][Podcast][Aud][Cam] |
1/05, 10:00 a.m. |
Organizers |
Introductory Remarks[Podcast][Aud][Cam] |