KITP Program: Evolution of Molecular Networks http://www.kitp.ucsb.edu/online/evonet07/ KITP Program: Evolution of Molecular Networks KITP Program: Evolution of Molecular Networks en-us © 2006 by the individual authors doug@kitp.ucsb.edu webmaster@kitp.ucsb.edu Wed, 11 Apr 2007 12:37:28 -0700 Wed, 11 Apr 2007 12:37:28 -0700 Education http://blogs.law.harvard.edu/tech/rss 240 The Evolutionary Processes Shaping the Human Genome http://online.kitp.ucsb.edu/online/evonet07/arndt/ Peter Arndt, Max Planck & KITP (Peter Arndt, Max Planck & KITP) Peter Arndt, Max Planck & KITP http://online.kitp.ucsb.edu/online/evonet07/arndt/ Wed, 14 Mar 2007 10:00:00 -0700 1:00:40 Deciphering a Cis-regulatory Transcriptional Grammar: a Bottom-up Approach http://online.kitp.ucsb.edu/online/evonet07/arnosti/ David Arnosti, Michigan State University (David Arnosti, Michigan State University) David Arnosti, Michigan State University http://online.kitp.ucsb.edu/online/evonet07/arnosti/ Wed, 28 Feb 2007 10:00:00 -0800 2:16:27 Genomic Stability, Selection and Longevity http://online.kitp.ucsb.edu/online/evonet07/atwal/ Gurinder Atwal, IAS (Gurinder Atwal, IAS) Gurinder Atwal, IAS http://online.kitp.ucsb.edu/online/evonet07/atwal/ Mon, 29 Jan 2007 14:30:00 -0800 1:09:00 Prebiotic Synthesis in Planetary Atmospheres http://online.kitp.ucsb.edu/online/evonet07/bada/ Prof. Jeffrey Bada, UCSD (Prof. Jeffrey Bada, UCSD) Prof. Jeffrey Bada, UCSD http://online.kitp.ucsb.edu/online/evonet07/bada/ Fri, 19 Jan 2007 10:00:00 -0800 1:41:17 Clusters, Motifs, and Cross-species Correlations in Biological Networks http://online.kitp.ucsb.edu/online/evonet07/berg/ Johannes Berg, University of Cologne & KITP (Johannes Berg, University of Cologne & KITP) Johannes Berg, University of Cologne & KITP http://online.kitp.ucsb.edu/online/evonet07/berg/ Tue, 27 Mar 2007 15:30:00 -0700 1:15:34 mtDNA Markers for Longevity in Japan, Selection and Genetic Drift http://online.kitp.ucsb.edu/online/evonet07/bhanot/ Gyan Bhanot, IAS (Gyan Bhanot, IAS) Gyan Bhanot, IAS http://online.kitp.ucsb.edu/online/evonet07/bhanot/ Tue, 30 Jan 2007 14:00:00 -0800 1:10:55 An Evolutionary Hypothesis and Computational Identification of Insertional RNA Editing Sites http://online.kitp.ucsb.edu/online/evonet07/bundschuh/ Ralf Bundschuh, Ohio State University & KITP (Ralf Bundschuh, Ohio State University & KITP) Ralf Bundschuh, Ohio State University & KITP http://online.kitp.ucsb.edu/online/evonet07/bundschuh/ Thu, 25 Jan 2007 16:00:00 -0800 1:07:56 A Likeli(hood) Story: Precise Modeling of Transcription Factor-DNA Interaction from High-Throughput Binding Assays http://online.kitp.ucsb.edu/online/evonet07/callan/ Curt Callan, Princeton & KITP (Curt Callan, Princeton & KITP) Curt Callan, Princeton & KITP http://online.kitp.ucsb.edu/online/evonet07/callan/ Fri, 16 Feb 2007 10:00:00 -0800 1:15:35 Macro- and Micro Evolution of Gene Regulation Mediated by MicroRNAs http://online.kitp.ucsb.edu/online/evonet07/chen/ Kevin Chen, NYU & KITP (Kevin Chen, NYU & KITP) Kevin Chen, NYU & KITP http://online.kitp.ucsb.edu/online/evonet07/chen/ Tue, 20 Mar 2007 10:00:00 -0700 1:34:29 Principles of Developmental Gene Regulation http://online.kitp.ucsb.edu/online/evonet07/davidson1/ Eric Davidson, Caltech (Eric Davidson, Caltech) Eric Davidson, Caltech http://online.kitp.ucsb.edu/online/evonet07/davidson1/ Mon, 12 Feb 2007 10:30:00 -0800 1:47:29 The Sea Urchin Endomesoderm Gene Regulatory Network as an Explanation of Developmental Phenomenology http://online.kitp.ucsb.edu/online/evonet07/davidson2/ Eric Davidson, Caltech (Eric Davidson, Caltech) Eric Davidson, Caltech http://online.kitp.ucsb.edu/online/evonet07/davidson2/ Tue, 13 Feb 2007 10:00:00 -0800 1:54:22 Animal Evolution http://online.kitp.ucsb.edu/online/evonet07/davidson3/ Eric Davidson, Caltech (Eric Davidson, Caltech) Eric Davidson, Caltech http://online.kitp.ucsb.edu/online/evonet07/davidson3/ Tue, 20 Feb 2007 10:00:00 -0800 2:25:56 Animal Evolution, cont'd http://online.kitp.ucsb.edu/online/evonet07/davidson4/ Eric Davidson, Caltech (Eric Davidson, Caltech) Eric Davidson, Caltech http://online.kitp.ucsb.edu/online/evonet07/davidson4/ Tue, 20 Feb 2007 13:20:00 -0800 45:58 How Asexual Populations Adapt http://online.kitp.ucsb.edu/online/evonet07/desai/ Michael Desai, Princeton (Michael Desai, Princeton) Michael Desai, Princeton http://online.kitp.ucsb.edu/online/evonet07/desai/ Thu, 08 Feb 2007 15:30:00 -0800 1:05:20 Using in Vitro Selection to Infer Transcription Regulatory Networks http://online.kitp.ucsb.edu/online/evonet07/djordjevic/ Marko Djordjevic, Ohio State University & KITP (Marko Djordjevic, Ohio State University & KITP) Marko Djordjevic, Ohio State University & KITP http://online.kitp.ucsb.edu/online/evonet07/djordjevic/ Fri, 16 Feb 2007 15:30:00 -0800 1:18:49 Adaptive Diversification: Theory and Experiments http://online.kitp.ucsb.edu/online/evonet07/doebeli/ Michael Doebeli, UBC (Michael Doebeli, UBC) Michael Doebeli, UBC http://online.kitp.ucsb.edu/online/evonet07/doebeli/ Tue, 03 Apr 2007 10:00:00 -0700 1:59:37 Robustness and Evolution of the Caenorhabditis Vulva Signaling Network http://online.kitp.ucsb.edu/online/evonet07/felix/ Marie-Anne Felix, Institut Jacques Monod (Marie-Anne Felix, Institut Jacques Monod) Marie-Anne Felix, Institut Jacques Monod http://online.kitp.ucsb.edu/online/evonet07/felix/ Tue, 27 Feb 2007 10:00:00 -0800 1:37:57 Evolutionary Selection between Alternative Modes of Gene Regulation http://online.kitp.ucsb.edu/online/evonet07/gerland/ Ulrich Gerland, Ludwig Max. Univ. & KITP (Ulrich Gerland, Ludwig Max. Univ. & KITP) Ulrich Gerland, Ludwig Max. Univ. & KITP http://online.kitp.ucsb.edu/online/evonet07/gerland/ Tue, 27 Feb 2007 15:00:00 -0800 59:06 Elucidating the Small RNA Profile of the Transcriptome http://online.kitp.ucsb.edu/online/evonet07/green/ Pamela Green, University of Delaware (Pamela Green, University of Delaware) Pamela Green, University of Delaware http://online.kitp.ucsb.edu/online/evonet07/green/ Mon, 19 Mar 2007 10:00:00 -0700 1:40:27 Genome Evolution by Repeat Duplication http://online.kitp.ucsb.edu/online/evonet07/gruen/ Dominic Gruen, University of Koeln & KITP (Dominic Gruen, University of Koeln & KITP) Dominic Gruen, University of Koeln & KITP http://online.kitp.ucsb.edu/online/evonet07/gruen/ Thu, 08 Feb 2007 10:00:00 -0800 51:51 Functional Genomics in C. Elegans: Genome-Scale Approaches in an Animal Reference Species http://online.kitp.ucsb.edu/online/evonet07/gunsalus1/ Kris Gunsalus, NYU & KITP (Kris Gunsalus, NYU & KITP) Kris Gunsalus, NYU & KITP http://online.kitp.ucsb.edu/online/evonet07/gunsalus1/ Wed, 07 Mar 2007 14:00:00 -0800 57:49 Molecular Machines and Networks in C. Elegans Early Development http://online.kitp.ucsb.edu/online/evonet07/gunsalus2/ Kris Gunsalus, NYU & KITP (Kris Gunsalus, NYU & KITP) Kris Gunsalus, NYU & KITP http://online.kitp.ucsb.edu/online/evonet07/gunsalus2/ Thu, 08 Mar 2007 10:00:00 -0800 1:34:55 Identification and Editing of microRNAs http://online.kitp.ucsb.edu/online/evonet07/hatzigeorgiou/ Artemis Hatzigeorgiou, University of Penn & KITP (Artemis Hatzigeorgiou, University of Penn & KITP) Artemis Hatzigeorgiou, University of Penn & KITP http://online.kitp.ucsb.edu/online/evonet07/hatzigeorgiou/ Wed, 14 Mar 2007 16:00:00 -0700 1:06:50 Decoding the Regulatory Architecture of Cell Type Specification in C.elegans http://online.kitp.ucsb.edu/online/evonet07/hobert/ Oliver Hobert, Columbia (Oliver Hobert, Columbia) Oliver Hobert, Columbia http://online.kitp.ucsb.edu/online/evonet07/hobert/ Mon, 12 Mar 2007 14:00:00 -0700 1:32:44 RNA Splicing: At the Interface of Genomics, Networks, and Evolution http://online.kitp.ucsb.edu/online/evonet07/holste/ Dirk Holste, Institute of Molecular Pathology, Vienna (Dirk Holste, Institute of Molecular Pathology, Vienna) Dirk Holste, Institute of Molecular Pathology, Vienna http://online.kitp.ucsb.edu/online/evonet07/holste/ Thu, 05 Apr 2007 16:00:00 -0700 1:22:14 Gene Duplication and the Evolution of Novel Protein Functions http://online.kitp.ucsb.edu/online/evonet07/hughes/ Austin Hughes, University of South Carolina (Austin Hughes, University of South Carolina) Austin Hughes, University of South Carolina http://online.kitp.ucsb.edu/online/evonet07/hughes/ Tue, 06 Feb 2007 10:00:00 -0800 1:00:08 Aspects of Bacterial Gene Regulation and Evolution http://online.kitp.ucsb.edu/online/evonet07/hwa/ Terry Hwa, UCSD (Terry Hwa, UCSD) Terry Hwa, UCSD http://online.kitp.ucsb.edu/online/evonet07/hwa/ Thu, 15 Feb 2007 15:30:00 -0800 1:35:00 Comparative Genomics, Duplication, and Coevolution of Duplicates http://online.kitp.ucsb.edu/online/evonet07/innan/ Hideki Innan, SOKEN, Kanagawa (Hideki Innan, SOKEN, Kanagawa) Hideki Innan, SOKEN, Kanagawa http://online.kitp.ucsb.edu/online/evonet07/innan/ Wed, 07 Feb 2007 10:00:00 -0800 1:04:55 (1) Gene Regulation by RNA Switches and Knots (2) A Duplication-divergence Model for Network Evolution http://online.kitp.ucsb.edu/online/evonet07/isambert/ Herve Isambert, Institut Curie & KITP (Herve Isambert, Institut Curie & KITP) Herve Isambert, Institut Curie & KITP http://online.kitp.ucsb.edu/online/evonet07/isambert/ Mon, 19 Mar 2007 14:00:00 -0700 1:45:44 Recreating the RNA World in the Laboratory http://online.kitp.ucsb.edu/online/evonet07/joyce/ Gerald Joyce, Scripps Research Institute (Gerald Joyce, Scripps Research Institute) Gerald Joyce, Scripps Research Institute http://online.kitp.ucsb.edu/online/evonet07/joyce/ Mon, 22 Jan 2007 10:00:00 -0800 1:59:38 How Scale-free are Biological Networks? http://online.kitp.ucsb.edu/online/evonet07/khanin/ Raya Khanin, University of Glasgow & KITP (Raya Khanin, University of Glasgow & KITP) Raya Khanin, University of Glasgow & KITP http://online.kitp.ucsb.edu/online/evonet07/khanin/ Thu, 29 Mar 2007 11:30:00 -0700 43:23 Systems Biology of C. Elegans http://online.kitp.ucsb.edu/online/evonet07/kim/ Stuart Kim, Stanford (Stuart Kim, Stanford) Stuart Kim, Stanford http://online.kitp.ucsb.edu/online/evonet07/kim/ Mon, 29 Jan 2007 10:00:00 -0800 1:41:20 Genome-wide View of Aging Gene Networks http://online.kitp.ucsb.edu/online/evonet07/kim2/ Stuart Kim, Stanford (Stuart Kim, Stanford) Stuart Kim, Stanford http://online.kitp.ucsb.edu/online/evonet07/kim2/ Wed, 31 Jan 2007 14:00:00 -0800 1:23:11 Origin and Evolution of Eukaryotes: the Role and Fate of Introns http://online.kitp.ucsb.edu/online/evonet07/koonin1/ Eugene Koonin, National Inst. of Health (Eugene Koonin, National Inst. of Health) Eugene Koonin, National Inst. of Health http://online.kitp.ucsb.edu/online/evonet07/koonin1/ Mon, 05 Mar 2007 10:00:00 -0800 1:35:47 The Cosmological Model of Eternal Inflation and the Transition from Chance to Biological Evolution in the History of Life http://online.kitp.ucsb.edu/online/evonet07/koonin2/ Eugene Koonin, National Inst. of Health (Eugene Koonin, National Inst. of Health) Eugene Koonin, National Inst. of Health http://online.kitp.ucsb.edu/online/evonet07/koonin2/ Tue, 06 Mar 2007 11:15:00 -0800 1:26:21 The Origin of Viruses and Cells: a 'Virus-first' Concept http://online.kitp.ucsb.edu/online/evonet07/koonin3/ Eugene Koonin, National Inst. of Health (Eugene Koonin, National Inst. of Health) Eugene Koonin, National Inst. of Health http://online.kitp.ucsb.edu/online/evonet07/koonin3/ Fri, 09 Mar 2007 11:30:00 -0800 1:22:27 Variation and Evolution of Segmentation in Drosophila http://online.kitp.ucsb.edu/online/evonet07/kreitman/ Martin Kreitman, University of Chicago (Martin Kreitman, University of Chicago) Martin Kreitman, University of Chicago http://online.kitp.ucsb.edu/online/evonet07/kreitman/ Thu, 15 Feb 2007 10:00:00 -0800 2:18:15 Life's Origin: What's the Real Question? http://online.kitp.ucsb.edu/online/evonet07/lancet/ Prof. Doron Lancet, Weizmann Institute & KITP (Prof. Doron Lancet, Weizmann Institute & KITP) Prof. Doron Lancet, Weizmann Institute & KITP http://online.kitp.ucsb.edu/online/evonet07/lancet/ Wed, 17 Jan 2007 10:30:00 -0800 1:17:07 Lipid World and Systems Prebiology http://online.kitp.ucsb.edu/online/evonet07/lancet1/ Prof. Doron Lancet, Weizmann Institute & KITP (Prof. Doron Lancet, Weizmann Institute & KITP) Prof. Doron Lancet, Weizmann Institute & KITP http://online.kitp.ucsb.edu/online/evonet07/lancet1/ Fri, 19 Jan 2007 15:30:00 -0800 1:24:51 Genomic Fitness Landscapes and Seascapes http://online.kitp.ucsb.edu/online/evonet07/lassig1/ Michael Laessig, University of Cologne & KITP (Michael Laessig, University of Cologne & KITP) Michael Laessig, University of Cologne & KITP http://online.kitp.ucsb.edu/online/evonet07/lassig1/ Mon, 05 Feb 2007 15:30:00 -0800 2:08:13 Gene Networks for Fly Gastrulation and Sea Squirt Cardiogenesis http://online.kitp.ucsb.edu/online/evonet07/levine1/ Mike Levine, UC Berkeley (Mike Levine, UC Berkeley) Mike Levine, UC Berkeley http://online.kitp.ucsb.edu/online/evonet07/levine1/ Mon, 26 Feb 2007 10:00:00 -0800 1:53:17 Yeast Transcriptional Networks- Dynamics and Evolution http://online.kitp.ucsb.edu/online/evonet07/li/ Hao Li, UCSF (Hao Li, UCSF) Hao Li, UCSF http://online.kitp.ucsb.edu/online/evonet07/li/ Thu, 25 Jan 2007 14:00:00 -0800 1:14:45 Gene Conversion and Codon Usage Bias in the Evolution of Yeast Duplicate Genes http://online.kitp.ucsb.edu/online/evonet07/li1/ Wen-Hsiung Li, University of Chicago (Wen-Hsiung Li, University of Chicago) Wen-Hsiung Li, University of Chicago http://online.kitp.ucsb.edu/online/evonet07/li1/ Tue, 06 Feb 2007 10:00:00 -0800 58:21 Yeast Transcriptional Networks- Dynamics and Evolution, part II http://online.kitp.ucsb.edu/online/evonet07/li2/ Hao Li, UCSF (Hao Li, UCSF) Hao Li, UCSF http://online.kitp.ucsb.edu/online/evonet07/li2/ Fri, 26 Jan 2007 16:00:00 -0800 49:28 Alternative Mechanisms of Immune Diversity http://online.kitp.ucsb.edu/online/evonet07/litman/ Gary Litman, U of South Florida (Gary Litman, U of South Florida) Gary Litman, U of South Florida http://online.kitp.ucsb.edu/online/evonet07/litman/ Mon, 09 Apr 2007 10:00:00 -0700 1:47:00 New Genes behind Males: The Patterns and Phenotypes of Gene Duplicates http://online.kitp.ucsb.edu/online/evonet07/long/ Manyuan Long, University of Chicago (Manyuan Long, University of Chicago) Manyuan Long, University of Chicago http://online.kitp.ucsb.edu/online/evonet07/long/ Wed, 07 Feb 2007 10:00:00 -0800 1:04:19 Adaptive Evolution in Dark Genomic Matter? Evidence for Positive Selection in Human Non-coding DNA http://online.kitp.ucsb.edu/online/evonet07/lunter/ Gerton Lunter, University of Oxford & KITP (Gerton Lunter, University of Oxford & KITP) Gerton Lunter, University of Oxford & KITP http://online.kitp.ucsb.edu/online/evonet07/lunter/ Thu, 08 Feb 2007 11:00:00 -0800 57:16 RNA Directed Post Trancriptional Silencing http://online.kitp.ucsb.edu/online/evonet07/macino1/ Giuseppe Macino, Univ. Roma (Giuseppe Macino, Univ. Roma) Giuseppe Macino, Univ. Roma http://online.kitp.ucsb.edu/online/evonet07/macino1/ Mon, 12 Mar 2007 10:00:00 -0700 1:39:12 What is the Natural Function of Gene Silencing? http://online.kitp.ucsb.edu/online/evonet07/macino2/ Giuseppe Macino, Univ. Roma (Giuseppe Macino, Univ. Roma) Giuseppe Macino, Univ. Roma http://online.kitp.ucsb.edu/online/evonet07/macino2/ Thu, 15 Mar 2007 10:00:00 -0700 1:14:23 Protein Binding Networks: from Topology to Kinetics http://online.kitp.ucsb.edu/online/evonet07/maslov/ Sergei Maslov, Brookhaven Natl. Lab & KITP (Sergei Maslov, Brookhaven Natl. Lab & KITP) Sergei Maslov, Brookhaven Natl. Lab & KITP http://online.kitp.ucsb.edu/online/evonet07/maslov/ Mon, 26 Mar 2007 10:00:00 -0700 1:58:01 Evolution of Mutation Rates in Bacteria http://online.kitp.ucsb.edu/online/evonet07/matic/ Ivan Matic, Necker Medical School, Paris (Ivan Matic, Necker Medical School, Paris) Ivan Matic, Necker Medical School, Paris http://online.kitp.ucsb.edu/online/evonet07/matic/ Wed, 24 Jan 2007 10:00:00 -0800 1:52:49 Evolution of Mutation Rates in Bacteria, part II http://online.kitp.ucsb.edu/online/evonet07/matic2/ Ivan Matic, Necker Medical School, Paris (Ivan Matic, Necker Medical School, Paris) Ivan Matic, Necker Medical School, Paris http://online.kitp.ucsb.edu/online/evonet07/matic2/ Wed, 24 Jan 2007 15:30:00 -0800 1:22:40 What Sets Evolutionary Rates: Experiment and Theory http://online.kitp.ucsb.edu/online/evonet07/murray/ Andrew Murray, Harvard (Andrew Murray, Harvard) Andrew Murray, Harvard http://online.kitp.ucsb.edu/online/evonet07/murray/ Fri, 26 Jan 2007 10:00:00 -0800 2:05:17 What Sets Evolutionary Rates: Experiment and Theory, part II http://online.kitp.ucsb.edu/online/evonet07/murray2/ Andrew Murray, Harvard (Andrew Murray, Harvard) Andrew Murray, Harvard http://online.kitp.ucsb.edu/online/evonet07/murray2/ Fri, 26 Jan 2007 14:00:00 -0800 1:19:20 The Semi-synthetic "Minimal Cell": A Model for Early Living Cells http://online.kitp.ucsb.edu/online/evonet07/murtas/ Giovanni Murtas, University of Rome & KITP (Dr. Giovanni Murtas, University of Rome & KITP) Dr. Giovanni Murtas, University of Rome & KITP http://online.kitp.ucsb.edu/online/evonet07/murtas/ Thu, 18 Jan 2007 15:30:00 -0800 1:19:52 Fitness Landscapes of Transcription Factor Binding Sites http://online.kitp.ucsb.edu/online/evonet07/mustonen/ Ville Mustonen, Univ. Koeln & KITP (Ville Mustonen, Univ. Koeln & KITP) Ville Mustonen, Univ. Koeln & KITP http://online.kitp.ucsb.edu/online/evonet07/mustonen/ Fri, 16 Feb 2007 11:30:00 -0800 47:53 Does Topology of a Biochemical Network Influence its Function? http://online.kitp.ucsb.edu/online/evonet07/nemenman/ Ilya Nemenman, LANL & KITP (Ilya Nemenman, LANL & KITP) Ilya Nemenman, LANL & KITP http://online.kitp.ucsb.edu/online/evonet07/nemenman/ Thu, 29 Mar 2007 10:00:00 -0700 1:18:35 Variation and Evolution of Core Promoters http://online.kitp.ucsb.edu/online/evonet07/ohler/ Uwe Ohler, Duke University & KITP (Uwe Ohler, Duke University & KITP) Uwe Ohler, Duke University & KITP http://online.kitp.ucsb.edu/online/evonet07/ohler/ Fri, 23 Feb 2007 10:00:00 -0800 2:17:25 Population Genetics of Gene Regulation and Gene Duplication http://online.kitp.ucsb.edu/online/evonet07/ohta/ Tomoko Ohta, National Inst. Genetics (Tomoko Ohta, National Inst. Genetics) Tomoko Ohta, National Inst. Genetics http://online.kitp.ucsb.edu/online/evonet07/ohta/ Mon, 05 Feb 2007 10:00:00 -0800 1:09:25 Early Embryogenesis in C. elegans and Related Nematodes http://online.kitp.ucsb.edu/online/evonet07/piano/ Fabio Piano, NYU & KITP (Fabio Piano, NYU & KITP) Fabio Piano, NYU & KITP http://online.kitp.ucsb.edu/online/evonet07/piano/ Wed, 07 Mar 2007 10:00:00 -0800 1:46:36 3' UTRomics in C. elegans http://online.kitp.ucsb.edu/online/evonet07/piano2/ Fabio Piano, NYU & KITP (Fabio Piano, NYU & KITP) Fabio Piano, NYU & KITP http://online.kitp.ucsb.edu/online/evonet07/piano2/ Tue, 13 Mar 2007 14:00:00 -0700 36:30 microRNA Targets http://online.kitp.ucsb.edu/online/evonet07/rajewsky2/ Nikolaus Rajewsky, MDC-Berlin & KITP (Nikolaus Rajewsky, MDC-Berlin & KITP) Nikolaus Rajewsky, MDC-Berlin & KITP http://online.kitp.ucsb.edu/online/evonet07/rajewsky2/ Tue, 13 Mar 2007 10:30:00 -0700 1:49:49 Genetic Context Dependence Diversifies Evolving Microbial Populations http://online.kitp.ucsb.edu/online/evonet07/remold/ Susi Remold, University of Louisville (Susi Remold, University of Louisville) Susi Remold, University of Louisville http://online.kitp.ucsb.edu/online/evonet07/remold/ Thu, 01 Feb 2007 10:00:00 -0800 1:46:59 The Properties of p53 Transcription Factor Binding Sites http://online.kitp.ucsb.edu/online/evonet07/riley/ Todd Riley, IAS (Todd Riley, IAS) Todd Riley, IAS http://online.kitp.ucsb.edu/online/evonet07/riley/ Tue, 30 Jan 2007 15:30:00 -0800 1:16:34 Isochores: the Origins are at the Ends http://online.kitp.ucsb.edu/online/evonet07/robins/ Harlan Robins, Fred Hutchinson Cancer Research Center (Harlan Robins, Fred Hutchinson Cancer Research Center) Harlan Robins, Fred Hutchinson Cancer Research Center http://online.kitp.ucsb.edu/online/evonet07/robins/ Wed, 31 Jan 2007 16:00:00 -0800 1:15:53 Networks for Cell Fate Specification and Reprogramming in C. elegans Embryos http://online.kitp.ucsb.edu/online/evonet07/rothman/ Joel Rothman, UCSB (Joel Rothman, UCSB) Joel Rothman, UCSB http://online.kitp.ucsb.edu/online/evonet07/rothman/ Fri, 02 Mar 2007 10:00:00 -0800 1:42:22 Worlds within the Tiny RNA World http://online.kitp.ucsb.edu/online/evonet07/ruvkun/ Gary Ruvkun, Massachusetts General Hospital (Gary Ruvkun, Massachusetts General Hospital) Gary Ruvkun, Massachusetts General Hospital http://online.kitp.ucsb.edu/online/evonet07/ruvkun/ Wed, 21 Feb 2007 16:00:00 -0800 1:39:35 How Protein Function Shapes Biological Evolution http://online.kitp.ucsb.edu/online/evonet07/shakhnovich/ Eugene Shakhnovich, Harvard & KITP (Eugene Shakhnovich, Harvard & KITP) Eugene Shakhnovich, Harvard & KITP http://online.kitp.ucsb.edu/online/evonet07/shakhnovich/ Thu, 05 Apr 2007 10:00:00 -0700 1:49:07 Evolution of Antibiotic Resistance in S. Aureus http://online.kitp.ucsb.edu/online/evonet07/siggia/ Eric Siggia, Rockefeller (Eric Siggia, Rockefeller) Eric Siggia, Rockefeller http://online.kitp.ucsb.edu/online/evonet07/siggia/ Mon, 26 Feb 2007 15:00:00 -0800 1:06:58 Tutorial: Manipulating Genes in Drosophila http://online.kitp.ucsb.edu/online/evonet07/small1/ Stephen Small, NYU (Stephen Small, NYU) Stephen Small, NYU http://online.kitp.ucsb.edu/online/evonet07/small1/ Mon, 12 Feb 2007 15:30:00 -0800 1:31:38 Gradients, Networks, and Evolution in Insects http://online.kitp.ucsb.edu/online/evonet07/small2/ Stephen Small, NYU (Stephen Small, NYU) Stephen Small, NYU http://online.kitp.ucsb.edu/online/evonet07/small2/ Wed, 14 Feb 2007 10:00:00 -0800 1:54:12 Gradients, Networks, and Evolution in Insects, cont'd http://online.kitp.ucsb.edu/online/evonet07/small3/ Stephen Small, NYU (Stephen Small, NYU) Stephen Small, NYU http://online.kitp.ucsb.edu/online/evonet07/small3/ Wed, 14 Feb 2007 15:30:00 -0800 1:23:18 Insect Evolution http://online.kitp.ucsb.edu/online/evonet07/small4/ Stephen Small, NYU & KITP (Stephen Small, NYU & KITP) Stephen Small, NYU & KITP http://online.kitp.ucsb.edu/online/evonet07/small4/ Wed, 21 Feb 2007 10:00:00 -0800 1:35:00 Transcription Regulation in Temperate Phages: Mechanisms, Functions, and Evolution http://online.kitp.ucsb.edu/online/evonet07/sneppen/ Kim Sneppen, Nordita & KITP (Kim Sneppen, Nordita & KITP) Kim Sneppen, Nordita & KITP http://online.kitp.ucsb.edu/online/evonet07/sneppen/ Thu, 01 Mar 2007 16:00:00 -0800 1:08:53 Rapidly Evolving Transcription Factors and Selection for Change in Vertebrate Regulatory Networks http://online.kitp.ucsb.edu/online/evonet07/stubbs/ Lisa Stubbs, LLNL (Lisa Stubbs, LLNL) Lisa Stubbs, LLNL http://online.kitp.ucsb.edu/online/evonet07/stubbs/ Thu, 08 Mar 2007 16:00:00 -0800 1:17:24 Inference of Protein Functions and Domain Interactions from Protein Interactions http://online.kitp.ucsb.edu/online/evonet07/sun/ Fengzhu Sun, USC & KITP (Fengzhu Sun, USC & KITP) Fengzhu Sun, USC & KITP http://online.kitp.ucsb.edu/online/evonet07/sun/ Wed, 28 Mar 2007 11:15:00 -0700 53:48 Functional Importance and Selective Constraints in Human Non-coding DNA http://online.kitp.ucsb.edu/online/evonet07/sunyaev/ Shamil Sunyaev, Harvard Medical School & KITP (Shamil Sunyaev, Harvard Medical School & KITP) Shamil Sunyaev, Harvard Medical School & KITP http://online.kitp.ucsb.edu/online/evonet07/sunyaev/ Mon, 05 Mar 2007 15:30:00 -0800 1:24:38 Functional Importance and Selective Constraints in Human Non-coding DNA, Continued http://online.kitp.ucsb.edu/online/evonet07/sunyaev2/ Shamil Sunyaev, Harvard Medical & KITP (Shamil Sunyaev, Harvard Medical & KITP) Shamil Sunyaev, Harvard Medical & KITP http://online.kitp.ucsb.edu/online/evonet07/sunyaev2/ Wed, 14 Mar 2007 10:00:00 -0700 1:04:00 Stochasticity and Designs of Biochemical Networks http://online.kitp.ucsb.edu/online/evonet07/swain/ Peter Swain, McGill University & KITP (Peter Swain, McGill University & KITP) Peter Swain, McGill University & KITP http://online.kitp.ucsb.edu/online/evonet07/swain/ Tue, 03 Apr 2007 15:00:00 -0700 1:15:22 The Origin of Life and the Emergence of Darwinian Evolution http://online.kitp.ucsb.edu/online/evonet07/szostak/ Prof. Jack Szostak, Harvard Medical School (Prof. Jack Szostak, Harvard Medical School) Prof. Jack Szostak, Harvard Medical School http://online.kitp.ucsb.edu/online/evonet07/szostak/ Thu, 18 Jan 2007 10:00:00 -0800 1:46:08 Tracing Evolution in Empirical Fitness Landscapes http://online.kitp.ucsb.edu/online/evonet07/tans/ Sander Tans, AMOLF, Amsterdam & KITP (Sander Tans, AMOLF, Amsterdam & KITP) Sander Tans, AMOLF, Amsterdam & KITP http://online.kitp.ucsb.edu/online/evonet07/tans/ Thu, 25 Jan 2007 10:00:00 -0800 1:38:28 Evolvability and Protein Divergence in Homo Sapiens http://online.kitp.ucsb.edu/online/evonet07/teichmann/ Sarah Teichmann, MRC Laboratory of Molecular Biology (Sarah Teichmann, MRC Laboratory of Molecular Biology) Sarah Teichmann, MRC Laboratory of Molecular Biology http://online.kitp.ucsb.edu/online/evonet07/teichmann/ Tue, 27 Mar 2007 10:00:00 -0700 1:27:06 Using RNA Binding Proteins and MicroRNAs Targeting to Identify cis Regulatory Elements in RNA http://online.kitp.ucsb.edu/online/evonet07/tenenbaum/ Scott Tenenbaum, SUNY, Albany (Scott Tenenbaum, SUNY, Albany) Scott Tenenbaum, SUNY, Albany http://online.kitp.ucsb.edu/online/evonet07/tenenbaum/ Wed, 21 Mar 2007 10:00:00 -0700 1:29:46 Sources of Biological Diversity http://online.kitp.ucsb.edu/online/evonet07/travisano/ Michael Travisano, U of Minnesota (Michael Travisano, U of Minnesota) Michael Travisano, U of Minnesota http://online.kitp.ucsb.edu/online/evonet07/travisano/ Wed, 11 Apr 2007 10:00:00 -0700 1:23:18 Computational Annotation of Regulatory Sites http://online.kitp.ucsb.edu/online/evonet07/vannimwegen/ Erik van Nimwegen, University of Basel & KITP (Erik van Nimwegen, University of Basel & KITP) Erik van Nimwegen, University of Basel & KITP http://online.kitp.ucsb.edu/online/evonet07/vannimwegen/ Thu, 22 Feb 2007 10:00:00 -0800 2:38:19 Inferring Protein-Protein Interactions from Aminoacid Sequences: Application to Two-component Systems http://online.kitp.ucsb.edu/online/evonet07/vannimwegen1/ Erik van Nimwegen, Univ. Basel & KITP (Erik van Nimwegen, Univ. Basel & KITP) Erik van Nimwegen, Univ. Basel & KITP http://online.kitp.ucsb.edu/online/evonet07/vannimwegen1/ Mon, 05 Mar 2007 14:00:00 -0800 1:19:12 Small non-coding RNAs in Bacteria http://online.kitp.ucsb.edu/online/evonet07/vergassola/ Massimo Vergassola, Institute Pasteur & KITP (Massimo Vergassola, Institute Pasteur & KITP) Massimo Vergassola, Institute Pasteur & KITP http://online.kitp.ucsb.edu/online/evonet07/vergassola/ Thu, 15 Mar 2007 14:00:00 -0700 1:19:08 Is There a Network Biology? http://online.kitp.ucsb.edu/online/evonet07/wagner/ Andreas Wagner, University of Zurich (Andreas Wagner, University of Zurich) Andreas Wagner, University of Zurich http://online.kitp.ucsb.edu/online/evonet07/wagner/ Tue, 06 Mar 2007 10:00:00 -0800 1:12:44 Robustness and Potential Landscapes of Cellular Networks http://online.kitp.ucsb.edu/online/evonet07/wang/ Jin Wang, University of Stony Brook & KITP (Jin Wang, University of Stony Brook & KITP) Jin Wang, University of Stony Brook & KITP http://online.kitp.ucsb.edu/online/evonet07/wang/ Wed, 28 Mar 2007 10:00:00 -0700 1:12:09 Genetic Basis of Regulatory Variation within and between Species http://online.kitp.ucsb.edu/online/evonet07/wittkopp/ Trisha Wittkopp, University of Michigan (Trisha Wittkopp, University of Michigan) Trisha Wittkopp, University of Michigan http://online.kitp.ucsb.edu/online/evonet07/wittkopp/ Mon, 02 Apr 2007 10:00:00 -0700 2:00:45 Computational Methods for Studying mRNA Diversity http://online.kitp.ucsb.edu/online/evonet07/zavolan/ Mihaela Zavolan, University of Basel & KITP (Mihaela Zavolan, University of Basel & KITP) Mihaela Zavolan, University of Basel & KITP http://online.kitp.ucsb.edu/online/evonet07/zavolan/ Tue, 13 Feb 2007 15:00:00 -0800 1:20:18 (micro)RNomics: Identification and Expression Analysis of Small Regulatory RNAs http://online.kitp.ucsb.edu/online/evonet07/zavolan2/ Mihaela Zavolan, Univ. of Basel & KITP (Mihaela Zavolan, Univ. of Basel & KITP) Mihaela Zavolan, Univ. of Basel & KITP http://online.kitp.ucsb.edu/online/evonet07/zavolan2/ Fri, 09 Mar 2007 10:00:00 -0800 1:12:40